Variant report

Variant	rs60485621
Chromosome Location	chr11:64587710-64587711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64586563..64588523-chr11:64589610..64592026,2	K562	blood:
2	chr11:64586935..64588442-chr11:64610471..64611985,2	K562	blood:
3	chr11:64583977..64586361-chr11:64586559..64588494,2	MCF-7	breast:
4	chr11:64586642..64588558-chr11:64884744..64886323,2	MCF-7	breast:
5	chr11:64582232..64584075-chr11:64585762..64588441,2	K562	blood:
6	chr11:64585366..64587846-chr11:64607616..64610461,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174276	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57952712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
6	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
7	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
9	nsv825949	chr11:64577366-64591157	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64578200-64599000	Weak transcription	Spleen	Spleen
2	chr11:64578600-64591600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:64578600-64602600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:64578800-64590000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:64578800-64590600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:64578800-64592600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:64578800-64592800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:64578800-64592800	Weak transcription	NHEK	skin
9	chr11:64578800-64596800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:64578800-64601400	Weak transcription	Stomach Mucosa	stomach
11	chr11:64582600-64609600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:64582600-64611000	Weak transcription	Primary B cells from cord blood	blood
13	chr11:64582800-64593600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:64583200-64593200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:64583400-64590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:64583400-64592800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:64583400-64592800	Weak transcription	Pancreas	Pancrea
18	chr11:64583400-64593800	Weak transcription	HMEC	breast
19	chr11:64585000-64591400	Weak transcription	Primary T cells from cord blood	blood
20	chr11:64585000-64594400	Weak transcription	Colonic Mucosa	Colon
21	chr11:64585400-64589400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:64587600-64591000	Weak transcription	Placenta Amnion	Placenta Amnion

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