Variant report

Variant	rs60486248
Chromosome Location	chr6:149269575-149269576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149068356..149069972-chr6:149268764..149269822,7	MCF-7	breast:
2	chr6:149067411..149067919-chr6:149268731..149269686,2	K562	blood:
3	chr6:149268772..149269675-chr6:149347358..149348174,2	MCF-7	breast:
4	chr6:149068117..149069876-chr6:149269124..149271459,2	MCF-7	breast:
5	chr6:149269227..149269736-chr6:149294787..149295519,2	MCF-7	breast:
6	chr6:148899008..148899877-chr6:149268742..149269941,8	MCF-7	breast:
7	chr6:148898789..148900086-chr6:149268328..149269767,13	K562	blood:
8	chr6:149069327..149069921-chr6:149269105..149269693,3	MCF-7	breast:
9	chr6:149067355..149068145-chr6:149268892..149269692,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6902673	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149256600-149292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149257000-149285000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:149257600-149276200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:149261400-149285000	Weak transcription	Spleen	Spleen
5	chr6:149262000-149289600	Weak transcription	Aorta	Aorta
6	chr6:149262200-149276200	Weak transcription	Pancreas	Pancrea
7	chr6:149263400-149275400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:149263400-149275600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:149263400-149275600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:149263400-149275600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149265200-149270800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:149266800-149276200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:149267000-149276400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:149267200-149271000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:149267200-149273200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:149267200-149273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:149268400-149269600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:149268400-149269600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:149268600-149269600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:149268600-149269600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:149268600-149269600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:149268600-149269600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:149268600-149269600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:149268600-149269600	Enhancers	Fetal Muscle Leg	muscle
25	chr6:149268600-149270000	Enhancers	Stomach Mucosa	stomach
26	chr6:149268800-149269600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:149268800-149269600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:149268800-149269600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:149268800-149269600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:149268800-149269600	Enhancers	Brain Hippocampus Middle	brain
31	chr6:149268800-149269600	Enhancers	Brain Substantia Nigra	brain
32	chr6:149268800-149270200	Enhancers	Liver	Liver
33	chr6:149269000-149269600	Enhancers	Fetal Brain Male	brain
34	chr6:149269200-149269600	Flanking Active TSS	HepG2	liver
35	chr6:149269200-149276600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:149269400-149269600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:149269400-149270600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:149269400-149271000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:149269400-149271000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:149269400-149271000	Weak transcription	Right Atrium	heart
41	chr6:149269400-149272400	Weak transcription	Ovary	ovary
42	chr6:149269400-149272600	Weak transcription	Fetal Lung	lung
43	chr6:149269400-149272600	Weak transcription	Dnd41	blood
44	chr6:149269400-149273000	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:149269400-149273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:149269400-149273200	Weak transcription	Fetal Kidney	kidney
47	chr6:149269400-149273200	Weak transcription	Fetal Stomach	stomach
48	chr6:149269400-149276000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:149269400-149277600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:149269400-149288800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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