Variant report

Variant	rs6048689
Chromosome Location	chr20:23277876-23277877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23277266..23279560-chr20:23339707..23341405,2	K562	blood:
2	chr20:23277080..23279841-chr20:23280608..23283359,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6036368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048692	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7270895	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23275600-23285200	Weak transcription	Spleen	Spleen
2	chr20:23275800-23281800	Weak transcription	Right Atrium	heart
3	chr20:23276600-23279000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:23276800-23278600	Enhancers	Lung	lung
5	chr20:23277000-23278000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr20:23277000-23278400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr20:23277000-23278800	Enhancers	Fetal Stomach	stomach
8	chr20:23277000-23279200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr20:23277000-23280400	Enhancers	NHDF-Ad	bronchial
10	chr20:23277200-23278000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:23277200-23278400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:23277200-23278600	Enhancers	Fetal Lung	lung
13	chr20:23277200-23278600	Enhancers	HSMMtube	muscle
14	chr20:23277200-23279400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr20:23277200-23280000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr20:23277400-23278000	Enhancers	Fetal Muscle Leg	muscle
17	chr20:23277400-23278000	Enhancers	HepG2	liver
18	chr20:23277400-23279000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr20:23277800-23278000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr20:23277800-23278400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr20:23277800-23278600	Enhancers	Gastric	stomach
22	chr20:23277800-23279800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links