Variant report

Variant	rs60488460
Chromosome Location	chr3:24961890-24961891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13070123	0.98[ASN][1000 genomes]
rs17015448	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17015467	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58727158	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59986678	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60936546	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61176331	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73049488	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73049492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73051205	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73051208	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73051211	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73051231	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589953	chr3:24909003-25004804	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv876630	chr3:24911917-25066711	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24957400-24964200	Weak transcription	Fetal Lung	lung
2	chr3:24961400-24962000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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