Variant report

Variant	rs60491174
Chromosome Location	chr3:67567122-67567123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:67566852..67569780-chr3:67581868..67584034,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11926543	0.83[AFR][1000 genomes]
rs34371385	1.00[AMR][1000 genomes]
rs60329155	1.00[AMR][1000 genomes]
rs60640929	1.00[AMR][1000 genomes]
rs72923184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv834719	chr3:67396626-67589852	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1012416	chr3:67546244-67615531	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67508200-67577600	Weak transcription	Spleen	Spleen
2	chr3:67513400-67567800	Weak transcription	NHLF	lung
3	chr3:67521600-67580400	Weak transcription	Stomach Mucosa	stomach
4	chr3:67526800-67583200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:67531400-67576200	Weak transcription	HMEC	breast
6	chr3:67533200-67577000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:67533400-67577600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:67534400-67576400	Weak transcription	Aorta	Aorta
9	chr3:67535000-67578800	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:67537400-67579600	Weak transcription	Small Intestine	intestine
11	chr3:67541400-67582000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:67544200-67580200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:67544400-67567200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:67544800-67577600	Weak transcription	Thymus	Thymus
15	chr3:67553800-67579600	Weak transcription	Hela-S3	cervix
16	chr3:67554600-67577800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:67555800-67567800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:67555800-67579600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:67557400-67583200	Weak transcription	K562	blood
20	chr3:67558400-67571400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr3:67558400-67580200	Weak transcription	Fetal Thymus	thymus
22	chr3:67559600-67577600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:67560200-67581800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:67560400-67577600	Weak transcription	Right Ventricle	heart
25	chr3:67560600-67576800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:67560600-67580200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:67560600-67586200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:67560600-67620800	Weak transcription	Esophagus	oesophagus
29	chr3:67561800-67579400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:67563400-67571800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:67563400-67571800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr3:67563400-67572000	Strong transcription	Primary T cells from cord blood	blood
33	chr3:67563600-67567200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:67563600-67567800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr3:67563600-67568000	Strong transcription	GM12878-XiMat	blood
36	chr3:67563800-67567200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr3:67563800-67568200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr3:67563800-67569800	Strong transcription	Ovary	ovary
39	chr3:67563800-67571200	Strong transcription	Dnd41	blood
40	chr3:67563800-67571400	Strong transcription	Primary B cells from cord blood	blood
41	chr3:67563800-67571800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr3:67563800-67572200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:67563800-67572200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:67563800-67580800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:67564000-67570000	Strong transcription	HSMM	muscle
46	chr3:67564200-67567400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:67564200-67567400	Strong transcription	Fetal Stomach	stomach
48	chr3:67564200-67568000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:67564200-67569000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:67564400-67568600	Strong transcription	Rectal Mucosa Donor 31	rectum

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