Variant report

Variant	rs60491745
Chromosome Location	chr2:172897762-172897763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172895443..172898175-chr2:172947631..172951395,3	MCF-7	breast:
2	chr2:172863810..172866649-chr2:172897170..172900097,2	MCF-7	breast:
3	chr2:172889595..172892508-chr2:172896420..172898140,2	K562	blood:
4	chr2:172814398..172816773-chr2:172897088..172899114,2	MCF-7	breast:
5	chr2:172897019..172899837-chr2:172947846..172950553,2	MCF-7	breast:
6	chr2:172896231..172898804-chr2:172903539..172906403,3	K562	blood:
7	chr2:172897690..172899268-chr2:172922598..172924829,2	MCF-7	breast:
8	chr2:172897089..172900010-chr2:172909839..172912586,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11892858	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13394991	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13403822	0.81[ASN][1000 genomes]
rs17581610	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59609380	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6751078	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9973494	0.81[ASN][1000 genomes]
rs9973784	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875411	chr2:172693780-172942448	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv2830399	chr2:172781830-172952526	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1012188	chr2:172855923-172928891	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172878600-172898200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:172887400-172902800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:172893600-172902000	Weak transcription	K562	blood
4	chr2:172897000-172902600	Weak transcription	Spleen	Spleen
5	chr2:172897600-172897800	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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