Variant report

Variant	rs60496545
Chromosome Location	chr8:59132836-59132837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2015172	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59130600-59133200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:59131000-59133000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59131000-59133600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59131200-59133000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:59131200-59133000	Weak transcription	HMEC	breast
6	chr8:59131400-59133000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:59131600-59133200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:59132600-59133000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:59132800-59133600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:59132800-59133800	Enhancers	NH-A	brain
11	chr8:59132800-59134200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:59132800-59135200	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links