Variant report

Variant	rs6049657
Chromosome Location	chr20:24389819-24389820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28802916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58931227	1.00[AMR][1000 genomes]
rs6036769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336229	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3521655	chr20:24388002-24390600	Bivalent Enhancer Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3521654	chr20:24388373-24390335	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24384000-24390200	Weak transcription	Fetal Brain Female	brain
2	chr20:24387800-24392400	Weak transcription	Fetal Thymus	thymus
3	chr20:24388200-24390000	Weak transcription	Dnd41	blood
4	chr20:24388400-24390400	Weak transcription	Brain Substantia Nigra	brain
5	chr20:24388600-24391800	Weak transcription	Aorta	Aorta
6	chr20:24389800-24390200	Enhancers	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links