Variant report

Variant	rs6049746
Chromosome Location	chr20:24488460-24488461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28822488	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6049752	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6049754	0.97[EUR][1000 genomes]
rs6114748	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114754	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73343312	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24471200-24493600	Weak transcription	Fetal Brain Female	brain
2	chr20:24475600-24495600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24481600-24504200	Weak transcription	Fetal Brain Male	brain
4	chr20:24482000-24488600	Enhancers	Left Ventricle	heart
5	chr20:24483800-24488600	Enhancers	Brain Anterior Caudate	brain
6	chr20:24484000-24490000	Enhancers	Fetal Heart	heart
7	chr20:24484000-24493000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr20:24484600-24490600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24486200-24488800	Enhancers	Fetal Thymus	thymus
10	chr20:24486800-24488800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:24486800-24488800	Enhancers	Thymus	Thymus
12	chr20:24487000-24488800	Enhancers	HMEC	breast
13	chr20:24487200-24488600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:24487200-24488600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr20:24487200-24488600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr20:24487400-24488600	Enhancers	Brain Angular Gyrus	brain
17	chr20:24487400-24488600	Enhancers	Brain Hippocampus Middle	brain
18	chr20:24487600-24488600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr20:24487600-24488600	Enhancers	Brain Cingulate Gyrus	brain
20	chr20:24487800-24488600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr20:24487800-24488600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr20:24487800-24488600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr20:24487800-24488600	Enhancers	Brain Substantia Nigra	brain
24	chr20:24487800-24488800	Enhancers	Fetal Intestine Large	intestine
25	chr20:24487800-24489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr20:24488000-24488600	Enhancers	Fetal Muscle Trunk	muscle
27	chr20:24488200-24488600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr20:24488400-24488800	Enhancers	Fetal Intestine Small	intestine
29	chr20:24488400-24489400	Weak transcription	Right Atrium	heart
30	chr20:24488400-24490400	Weak transcription	Right Ventricle	heart
31	chr20:24488400-24492400	Weak transcription	Primary T cells from cord blood	blood

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