Variant report

Variant	rs605015
Chromosome Location	chr10:6205546-6205547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6185303..6188661-chr10:6204606..6207335,3	MCF-7	breast:
2	chr10:6198555..6200415-chr10:6204231..6206282,2	K562	blood:
3	chr10:6183365..6192251-chr10:6204124..6207252,15	MCF-7	breast:
4	chr10:6178289..6180326-chr10:6204239..6205826,2	K562	blood:
5	chr10:6154386..6156653-chr10:6205525..6207284,3	MCF-7	breast:
6	chr10:6204888..6206866-chr10:6235315..6238580,3	MCF-7	breast:
7	chr10:4943122..4945399-chr10:6203684..6206362,2	K562	blood:
8	chr10:6185340..6191102-chr10:6203416..6207424,7	K562	blood:
9	chr10:6204469..6207295-chr10:6338789..6342054,3	MCF-7	breast:
10	chr10:6202871..6212786-chr10:6240811..6248696,29	MCF-7	breast:
11	chr10:6203753..6210403-chr10:6228380..6234446,7	MCF-7	breast:
12	chr10:6204481..6206489-chr10:6404115..6406824,2	MCF-7	breast:
13	chr10:6180971..6185195-chr10:6203384..6207419,4	MCF-7	breast:
14	chr10:6203235..6207397-chr10:6442888..6446681,6	MCF-7	breast:
15	chr10:6192754..6196744-chr10:6204087..6207333,8	MCF-7	breast:
16	chr10:6146525..6148263-chr10:6204486..6206324,2	K562	blood:
17	chr10:6185650..6194925-chr10:6200700..6207657,20	K562	blood:
18	chr10:6204009..6209137-chr10:6241452..6247054,19	MCF-7	breast:
19	chr10:6129793..6132520-chr10:6203974..6206960,3	MCF-7	breast:
20	chr10:6150171..6151159-chr10:6205174..6205697,2	MCF-7	breast:
21	chr10:6188903..6191152-chr10:6204778..6206877,2	MCF-7	breast:
22	chr10:6205192..6207297-chr10:6278573..6280926,3	MCF-7	breast:
23	chr10:6199590..6201905-chr10:6203566..6205764,2	MCF-7	breast:
24	chr10:6202105..6203646-chr10:6203962..6206668,2	MCF-7	breast:
25	chr10:6205467..6207907-chr10:6231128..6234046,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263628	Chromatin interaction
ENSG00000213994	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000201581	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12572233	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572255	0.91[EUR][1000 genomes]
rs609587	0.86[EUR][1000 genomes]
rs613960	0.82[EUR][1000 genomes]
rs629298	0.84[EUR][1000 genomes]
rs641736	0.85[EUR][1000 genomes]
rs643503	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs643867	0.85[EUR][1000 genomes]
rs652318	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs653265	0.85[EUR][1000 genomes]
rs654876	0.82[EUR][1000 genomes]
rs657523	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs657600	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs658386	0.83[EUR][1000 genomes]
rs668796	0.85[EUR][1000 genomes]
rs669534	0.83[EUR][1000 genomes]
rs7896238	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6188400-6225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:6204000-6205800	Enhancers	NHDF-Ad	bronchial
3	chr10:6204600-6205600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr10:6204600-6205600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:6204600-6205600	Enhancers	Fetal Heart	heart
6	chr10:6204800-6205600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:6204800-6205600	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr10:6204800-6205600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:6204800-6205600	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr10:6204800-6206600	Active TSS	Rectal Smooth Muscle	rectum
11	chr10:6204800-6207000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:6205000-6205600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:6205000-6205600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr10:6205000-6205600	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr10:6205000-6205600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr10:6205000-6205600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr10:6205000-6205600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr10:6205000-6205600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:6205000-6205600	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr10:6205000-6205600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr10:6205000-6205600	Flanking Active TSS	Dnd41	blood
22	chr10:6205000-6205600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr10:6205000-6205600	Flanking Active TSS	NH-A	brain
24	chr10:6205000-6205600	Flanking Active TSS	Osteobl	bone
25	chr10:6205000-6206400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:6205000-6206400	Active TSS	Fetal Brain Female	brain
27	chr10:6205000-6206800	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr10:6205000-6206800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr10:6205200-6205600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:6205200-6205600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr10:6205200-6205600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:6205200-6205600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr10:6205200-6205600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:6205200-6205600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:6205200-6205600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:6205200-6205600	Flanking Active TSS	Liver	Liver
37	chr10:6205200-6205600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr10:6205200-6205600	Flanking Active TSS	Fetal Intestine Large	intestine
39	chr10:6205200-6205600	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr10:6205200-6205600	Flanking Active TSS	Fetal Muscle Trunk	muscle
41	chr10:6205200-6205600	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr10:6205200-6205600	Flanking Active TSS	Placenta	Placenta
43	chr10:6205200-6205600	Flanking Active TSS	Fetal Thymus	thymus
44	chr10:6205200-6205600	Flanking Active TSS	HUVEC	blood vessel
45	chr10:6205200-6205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:6205200-6205800	Weak transcription	Spleen	Spleen
47	chr10:6205200-6206200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:6205200-6206200	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr10:6205200-6206200	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr10:6205200-6206200	Active TSS	HSMMtube	muscle

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