Variant report

Variant	rs60502732
Chromosome Location	chr4:151103352-151103353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151102342..151104330-chr4:151119995..151122046,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56658749	1.00[AMR][1000 genomes]
rs57086689	1.00[AMR][1000 genomes]
rs57376312	1.00[AMR][1000 genomes]
rs58813780	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951529	0.87[AFR][1000 genomes]
rs72951530	0.87[AFR][1000 genomes]
rs72951532	0.87[AFR][1000 genomes]
rs72951545	0.87[AFR][1000 genomes]
rs72951591	1.00[AMR][1000 genomes]
rs72953824	1.00[AMR][1000 genomes]
rs72953832	1.00[AMR][1000 genomes]
rs72953841	1.00[AMR][1000 genomes]
rs72955804	1.00[AMR][1000 genomes]
rs72967205	1.00[AMR][1000 genomes]
rs72967244	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967249	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969281	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151091600-151104800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:151097600-151113800	Weak transcription	Aorta	Aorta
3	chr4:151097600-151129000	Weak transcription	Lung	lung
4	chr4:151098200-151120000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:151098200-151128000	Weak transcription	Fetal Stomach	stomach
6	chr4:151100000-151107000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:151100000-151127800	Weak transcription	Osteobl	bone
8	chr4:151100200-151116800	Weak transcription	HSMM	muscle
9	chr4:151101000-151104200	Enhancers	Fetal Brain Female	brain
10	chr4:151101200-151104200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:151101400-151103400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:151101400-151104200	Enhancers	Fetal Heart	heart
13	chr4:151101400-151104800	Enhancers	Brain Germinal Matrix	brain
14	chr4:151101600-151104400	Enhancers	Brain Anterior Caudate	brain
15	chr4:151101600-151127600	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:151101800-151103600	Enhancers	Fetal Muscle Leg	muscle
17	chr4:151102000-151103400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:151102000-151104600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:151102400-151103400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:151102400-151103600	Enhancers	Brain Angular Gyrus	brain
21	chr4:151102400-151103600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:151102400-151103800	Enhancers	Brain Hippocampus Middle	brain
23	chr4:151102400-151104000	Enhancers	Brain Cingulate Gyrus	brain
24	chr4:151102400-151104200	Enhancers	Fetal Brain Male	brain
25	chr4:151102800-151103400	Enhancers	Ovary	ovary
26	chr4:151102800-151105200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:151103000-151103600	Enhancers	Right Atrium	heart
28	chr4:151103000-151103800	Enhancers	Adipose Nuclei	Adipose
29	chr4:151103200-151103400	Enhancers	Left Ventricle	heart
30	chr4:151103200-151138000	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links