Variant report

Variant	rs60503826
Chromosome Location	chr11:70997158-70997159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70915958..70917712-chr11:70995189..70998003,2	MCF-7	breast:
2	chr11:70995291..70998088-chr11:71041899..71044106,2	MCF-7	breast:
3	chr11:70995195..70997597-chr11:71010431..71012982,2	MCF-7	breast:
4	chr11:70992890..70998671-chr11:71006581..71012132,9	MCF-7	breast:
5	chr11:70961612..70967443-chr11:70992106..70998044,17	MCF-7	breast:
6	chr11:70975707..70978964-chr11:70993986..70997364,3	MCF-7	breast:
7	chr11:70980062..70982454-chr11:70995115..70997170,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57565284	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70991800-70998000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:70992000-70999600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:70993000-70997600	Enhancers	NHEK	skin
4	chr11:70993000-70999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:70994000-70997800	Weak transcription	Fetal Lung	lung
6	chr11:70994000-70998000	Weak transcription	Spleen	Spleen
7	chr11:70994600-70998000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:70995200-70998800	Enhancers	Fetal Muscle Leg	muscle
9	chr11:70995600-70998800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:70995800-70997600	Enhancers	HSMM	muscle
11	chr11:70996000-70997200	Weak transcription	A549	lung
12	chr11:70996000-70997600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:70996000-70997800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:70996000-70997800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:70996000-70998600	Enhancers	Pancreas	Pancrea
16	chr11:70996200-70997200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:70996200-70997400	Weak transcription	Lung	lung
18	chr11:70996200-70998200	Weak transcription	Stomach Mucosa	stomach
19	chr11:70996400-70997800	Weak transcription	Colonic Mucosa	Colon
20	chr11:70996400-70997800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:70996400-70997800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:70996400-70997800	Weak transcription	Gastric	stomach
23	chr11:70996400-70997800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:70996400-70998000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:70996400-70998600	Enhancers	Esophagus	oesophagus
26	chr11:70996600-70997200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:70996800-70997800	Enhancers	HSMMtube	muscle
28	chr11:70997000-70997200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:70997000-70997400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:70997000-70997600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr11:70997000-70997600	Enhancers	HMEC	breast
32	chr11:70997000-70998600	Enhancers	Fetal Kidney	kidney
33	chr11:70997000-70999600	Enhancers	NHDF-Ad	bronchial

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