Variant report

Variant	rs60523731
Chromosome Location	chr2:211066544-211066545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11682724	1.00[ASN][1000 genomes]
rs11887674	1.00[ASN][1000 genomes]
rs1468731	1.00[ASN][1000 genomes]
rs2539866	1.00[ASN][1000 genomes]
rs62001905	1.00[ASN][1000 genomes]
rs73984318	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211051000-211086600	Weak transcription	Adipose Nuclei	Adipose
2	chr2:211052200-211085600	Weak transcription	Aorta	Aorta
3	chr2:211052400-211067400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:211060200-211086600	Weak transcription	Pancreas	Pancrea
5	chr2:211060400-211078600	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:211060400-211089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:211062800-211067200	Weak transcription	Liver	Liver
8	chr2:211063400-211067600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:211063600-211067800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:211063800-211067600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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