Variant report

Variant	rs60527753
Chromosome Location	chr11:75032415-75032416
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75021557..75023439-chr11:75030012..75032787,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55993063	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
5	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74998800-75041400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:75000200-75037600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr11:75000400-75033000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:75005200-75033000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:75018200-75034800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:75021000-75037600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:75023400-75039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:75024800-75032800	Weak transcription	Primary T cells from cord blood	blood
9	chr11:75025400-75036600	Weak transcription	Hela-S3	cervix
10	chr11:75025400-75039600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:75025600-75033800	Weak transcription	Liver	Liver
12	chr11:75025600-75036600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:75025600-75036600	Weak transcription	NHDF-Ad	bronchial
14	chr11:75025600-75036800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:75025600-75037000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:75025800-75039600	Weak transcription	Thymus	Thymus
17	chr11:75027000-75033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:75027000-75033800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:75027000-75034800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:75027000-75039400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:75027800-75033600	Weak transcription	K562	blood
22	chr11:75028000-75032600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:75028000-75037600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:75028400-75032600	Genic enhancers	Fetal Intestine Small	intestine
25	chr11:75028600-75033800	Enhancers	Stomach Mucosa	stomach
26	chr11:75028600-75034000	Genic enhancers	Fetal Stomach	stomach
27	chr11:75028600-75038000	Enhancers	Pancreas	Pancrea
28	chr11:75029000-75033000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:75029000-75034800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:75029000-75034800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:75029000-75039600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:75029200-75039600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:75029400-75034800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:75029800-75032800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:75029800-75033000	Enhancers	Gastric	stomach
36	chr11:75030200-75033200	Enhancers	Brain Substantia Nigra	brain
37	chr11:75030200-75037400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:75030200-75037400	Weak transcription	Fetal Thymus	thymus
39	chr11:75030200-75037400	Genic enhancers	Lung	lung
40	chr11:75030400-75034200	Genic enhancers	HepG2	liver
41	chr11:75030800-75033200	Enhancers	Colon Smooth Muscle	Colon
42	chr11:75030800-75036000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:75030800-75036600	Weak transcription	NHLF	lung
44	chr11:75030800-75036800	Weak transcription	NHEK	skin
45	chr11:75031000-75032800	Enhancers	Duodenum Mucosa	Duodenum
46	chr11:75031000-75032800	Enhancers	Spleen	Spleen
47	chr11:75031000-75034600	Weak transcription	A549	lung
48	chr11:75031200-75032600	Enhancers	Fetal Brain Female	brain
49	chr11:75031200-75034200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:75031400-75032600	Enhancers	Primary T cells fromperipheralblood	blood

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