Variant report

Variant	rs60528820
Chromosome Location	chr2:210513527-210513528
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10169017	0.80[ASN][1000 genomes]
rs10172200	0.80[ASN][1000 genomes]
rs10193321	0.80[ASN][1000 genomes]
rs10196314	0.80[ASN][1000 genomes]
rs10196600	0.80[ASN][1000 genomes]
rs10206817	0.80[ASN][1000 genomes]
rs11691800	0.86[AMR][1000 genomes]
rs11691894	0.86[AMR][1000 genomes]
rs11692075	0.84[AMR][1000 genomes]
rs12618080	0.80[ASN][1000 genomes]
rs13423127	0.86[AMR][1000 genomes]
rs16843351	0.80[ASN][1000 genomes]
rs16843354	0.80[ASN][1000 genomes]
rs16843360	0.80[ASN][1000 genomes]
rs16843382	0.80[ASN][1000 genomes]
rs2271252	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2286849	0.84[AMR][1000 genomes]
rs2286850	0.86[AMR][1000 genomes]
rs2710482	0.80[ASN][1000 genomes]
rs3738935	0.86[AMR][1000 genomes]
rs3768815	0.84[AMR][1000 genomes]
rs3768816	0.86[AMR][1000 genomes]
rs3768820	0.81[AMR][1000 genomes]
rs3768823	0.81[AMR][1000 genomes]
rs3768828	0.81[AMR][1000 genomes]
rs3768835	0.80[ASN][1000 genomes]
rs3820748	0.86[AMR][1000 genomes]
rs6709925	0.84[AMR][1000 genomes]
rs6717554	0.80[ASN][1000 genomes]
rs6724834	0.84[AMR][1000 genomes]
rs6746029	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain
3	chr2:210501200-210516200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210501800-210517800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210503600-210517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:210507800-210517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:210507800-210525800	Weak transcription	NH-A	brain
8	chr2:210508000-210519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
10	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:210509400-210515800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210509600-210517800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:210513200-210513800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:210513200-210514200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:210513400-210513600	Enhancers	Fetal Brain Male	brain
16	chr2:210513400-210515800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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