Variant report

Variant	rs60529855
Chromosome Location	chr11:32906652-32906653
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32904524..32910209-chr11:32910222..32915650,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10488703	0.83[ASN][1000 genomes]
rs10488704	0.83[ASN][1000 genomes]
rs10767971	0.88[ASN][1000 genomes]
rs10767972	0.88[ASN][1000 genomes]
rs10835981	0.80[ASN][1000 genomes]
rs10835983	0.86[ASN][1000 genomes]
rs10835989	0.99[ASN][1000 genomes]
rs11032024	0.86[ASN][1000 genomes]
rs11032032	0.86[ASN][1000 genomes]
rs11032033	0.86[ASN][1000 genomes]
rs11032034	0.86[ASN][1000 genomes]
rs11032044	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11032046	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11032047	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11826294	0.90[ASN][1000 genomes]
rs16923617	0.92[ASN][1000 genomes]
rs197705	0.80[ASN][1000 genomes]
rs197707	0.80[ASN][1000 genomes]
rs28449959	0.81[ASN][1000 genomes]
rs2900981	0.85[ASN][1000 genomes]
rs4755454	0.97[ASN][1000 genomes]
rs55744018	0.81[ASN][1000 genomes]
rs55763432	0.85[ASN][1000 genomes]
rs56230223	0.81[ASN][1000 genomes]
rs60475066	0.86[ASN][1000 genomes]
rs7118630	0.89[ASN][1000 genomes]
rs7122029	0.94[ASN][1000 genomes]
rs7122130	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72899241	0.80[ASN][1000 genomes]
rs72899242	0.85[ASN][1000 genomes]
rs72901219	0.89[ASN][1000 genomes]
rs72901225	0.92[ASN][1000 genomes]
rs72901227	0.92[ASN][1000 genomes]
rs7933966	0.86[ASN][1000 genomes]
rs7943715	0.93[ASN][1000 genomes]
rs956322	0.85[ASN][1000 genomes]
rs9943603	0.87[ASN][1000 genomes]
rs9943661	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32905200-32908200	Enhancers	Liver	Liver
2	chr11:32905800-32913400	Weak transcription	Right Atrium	heart
3	chr11:32906000-32907400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:32906200-32907200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:32906200-32907200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:32906600-32906800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:32906600-32907000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:32906600-32907000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:32906600-32907200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:32906600-32907200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:32906600-32907400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:32906600-32907400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:32906600-32907400	Enhancers	K562	blood
14	chr11:32906600-32907600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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