Variant report

Variant	rs60533521
Chromosome Location	chr9:85169099-85169100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59370555	1.00[EUR][1000 genomes]
rs60180321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021753	1.00[EUR][1000 genomes]
rs7035647	1.00[EUR][1000 genomes]
rs7035686	1.00[EUR][1000 genomes]
rs73648457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73648459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73648461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73648488	1.00[EUR][1000 genomes]
rs73650735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73650743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7846939	1.00[EUR][1000 genomes]
rs7854783	1.00[EUR][1000 genomes]
rs7868675	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85161200-85173400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:85164800-85170800	Weak transcription	Stomach Mucosa	stomach
3	chr9:85167000-85171600	Weak transcription	Small Intestine	intestine
4	chr9:85167200-85174600	Weak transcription	Gastric	stomach
5	chr9:85168000-85170000	Weak transcription	HepG2	liver
6	chr9:85168200-85171000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:85168200-85172800	Enhancers	Fetal Lung	lung
8	chr9:85168600-85169200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:85168600-85169200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:85168600-85169200	Enhancers	Right Ventricle	heart
11	chr9:85168600-85169400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:85168600-85169400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:85168600-85169400	Enhancers	NHEK	skin
14	chr9:85168800-85169200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:85169000-85169200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:85169000-85169600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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