Variant report

Variant	rs60536334
Chromosome Location	chr9:25724360-25724361
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2158097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57453072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869035	chr9:25287213-25779281	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv531597	chr9:25325401-25779422	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831530	chr9:25563811-25754022	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892837	chr9:25713816-25825595	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1020052	chr9:25718004-25737726	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3482172	chr9:25722782-25724908	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3482169	chr9:25722806-25724886	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3482170	chr9:25722809-25724867	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3482171	chr9:25722866-25724807	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv19298	chr9:25722880-25724737	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3482173	chr9:25722880-25724807	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv1020511	chr9:25724120-25864209	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25716800-25724400	Weak transcription	Fetal Kidney	kidney
2	chr9:25721800-25724400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:25724000-25724600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:25724000-25724600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:25724200-25724600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:25724200-25724600	Enhancers	Hela-S3	cervix
7	chr9:25724200-25724600	Active TSS	HMEC	breast
8	chr9:25724200-25724600	Active TSS	NHEK	skin
9	chr9:25724200-25725600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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