Variant report

Variant	rs60537016
Chromosome Location	chr7:121199584-121199585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121171017..121172599-chr7:121198657..121201508,2	K562	blood:
2	chr7:121034856..121037751-chr7:121197132..121200010,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11982466	0.98[ASN][1000 genomes]
rs12113263	0.96[ASN][1000 genomes]
rs12538176	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358498	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17132746	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17132749	0.98[ASN][1000 genomes]
rs17132759	0.96[ASN][1000 genomes]
rs17143490	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17143502	0.98[ASN][1000 genomes]
rs17143518	0.98[ASN][1000 genomes]
rs17143547	0.96[ASN][1000 genomes]
rs17143550	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1807810	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2049701	0.98[ASN][1000 genomes]
rs2214706	0.96[ASN][1000 genomes]
rs2214707	0.96[ASN][1000 genomes]
rs5000108	0.98[ASN][1000 genomes]
rs5000110	0.95[ASN][1000 genomes]
rs5000111	0.95[ASN][1000 genomes]
rs5000112	0.95[ASN][1000 genomes]
rs5000113	0.98[ASN][1000 genomes]
rs5000115	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5000116	0.98[ASN][1000 genomes]
rs55718335	0.98[ASN][1000 genomes]
rs55724857	0.93[ASN][1000 genomes]
rs55818559	0.96[ASN][1000 genomes]
rs55972921	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56123566	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56156049	0.86[ASN][1000 genomes]
rs56377404	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56911184	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57704564	0.96[ASN][1000 genomes]
rs58109668	0.98[ASN][1000 genomes]
rs60858294	0.95[ASN][1000 genomes]
rs62472521	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62472545	0.98[ASN][1000 genomes]
rs6466797	0.96[ASN][1000 genomes]
rs68030420	0.96[ASN][1000 genomes]
rs6942542	0.96[ASN][1000 genomes]
rs6944967	0.98[ASN][1000 genomes]
rs6946556	0.98[ASN][1000 genomes]
rs6947850	0.95[ASN][1000 genomes]
rs6962871	0.98[ASN][1000 genomes]
rs6963361	0.98[ASN][1000 genomes]
rs6967572	0.96[ASN][1000 genomes]
rs6967738	0.96[ASN][1000 genomes]
rs736411	0.98[ASN][1000 genomes]
rs736412	0.98[ASN][1000 genomes]
rs740100	0.96[ASN][1000 genomes]
rs757710	0.96[ASN][1000 genomes]
rs757711	0.98[ASN][1000 genomes]
rs757712	0.98[ASN][1000 genomes]
rs7778645	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781058	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7798219	0.96[ASN][1000 genomes]
rs7798404	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7809871	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810840	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015438	chr7:121161554-121221761	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2761362	chr7:121172202-121252112	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121197600-121202200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:121198200-121201800	Weak transcription	HSMM	muscle
3	chr7:121198200-121202000	Weak transcription	Muscle Satellite Cultured Cells	--

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