Variant report

Variant	rs605446
Chromosome Location	chr13:30518009-30518010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10492460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503693	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs606744	0.93[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73159312	1.00[EUR][1000 genomes]
rs73159322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159324	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30510800-30521600	Weak transcription	Pancreas	Pancrea
2	chr13:30512400-30518400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:30514000-30522600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30516400-30518600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:30516400-30518800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:30516600-30518200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr13:30516600-30518600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:30516600-30518600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:30516600-30518800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:30516600-30519000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr13:30516800-30518400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:30516800-30518400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:30516800-30518600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr13:30517000-30518600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:30517200-30518200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr13:30517200-30518200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:30517200-30518400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:30517200-30518400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr13:30517400-30518200	Enhancers	Stomach Mucosa	stomach
20	chr13:30517400-30526000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:30517600-30518200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr13:30517600-30518400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr13:30517800-30518400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr13:30518000-30518200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr13:30518000-30518200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr13:30518000-30518600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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