The 2.0 version of rSNPBase

Variant report

Variant rs60547803
Chromosome Location chr1:9960183-9960184
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:9932600-9960200 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr1:9935600-9960800 Weak transcription Fetal Intestine Large intestine
3 chr1:9936400-9960200 Weak transcription Liver Liver
4 chr1:9943000-9960200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr1:9943200-9961600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:9943600-9960800 Weak transcription Primary T cells from cord blood blood
7 chr1:9949400-9967600 Weak transcription H9 Cell Line embryonic stem cell
8 chr1:9950600-9960600 Weak transcription Brain Germinal Matrix brain
9 chr1:9951200-9960600 Weak transcription Colon Smooth Muscle Colon
10 chr1:9951200-9961600 Weak transcription Fetal Brain Female brain
11 chr1:9951400-9962000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:9951600-9960200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:9951600-9961800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:9951600-9969000 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr1:9951800-9960400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr1:9951800-9960600 Weak transcription Stomach Smooth Muscle stomach
17 chr1:9953000-9960800 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr1:9953200-9960200 Weak transcription Fetal Intestine Small intestine
19 chr1:9953400-9960200 Weak transcription Esophagus oesophagus
20 chr1:9953400-9960400 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:9953600-9960400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:9953600-9960400 Weak transcription Right Ventricle heart
23 chr1:9953600-9960600 Weak transcription Fetal Muscle Leg muscle
24 chr1:9953600-9961200 Weak transcription Gastric stomach
25 chr1:9953800-9960200 Weak transcription HepG2 liver
26 chr1:9953800-9960600 Weak transcription Primary B cells from cord blood blood
27 chr1:9954000-9964600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr1:9954400-9960600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:9954400-9960600 Weak transcription Adipose Nuclei Adipose
30 chr1:9954600-9960200 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:9954600-9960200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:9954600-9960400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:9954600-9960400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr1:9954600-9960400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:9954600-9961400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:9954600-9961600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:9954800-9960200 Weak transcription Primary hematopoietic stem cells blood
38 chr1:9954800-9960200 Weak transcription GM12878-XiMat blood
39 chr1:9954800-9960400 Weak transcription Spleen Spleen
40 chr1:9954800-9960600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:9955000-9960600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:9957800-9960600 Enhancers Left Ventricle heart
43 chr1:9958000-9968800 Weak transcription Fetal Stomach stomach
44 chr1:9958600-9960600 Enhancers Primary monocytes fromperipheralblood blood
45 chr1:9958800-9960400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:9958800-9969000 Weak transcription Hela-S3 cervix
47 chr1:9959000-9960200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr1:9959000-9960200 Weak transcription NHEK skin
49 chr1:9959000-9960600 Weak transcription HMEC breast
50 chr1:9959000-9960800 Weak transcription HSMM muscle

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Last update: Aug 31, 2015