Variant report

Variant	rs60552083
Chromosome Location	chr1:67561772-67561773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67558831..67564229-chr1:67565617..67569175,7	K562	blood:
2	chr1:67551656..67556031-chr1:67559263..67563184,6	K562	blood:
3	chr1:67561173..67563270-chr1:67569179..67571534,2	K562	blood:
4	chr1:67561006..67563194-chr1:67569699..67571799,2	K562	blood:
5	chr1:67552378..67556698-chr1:67559401..67563184,5	K562	blood:
6	chr1:67560393..67564229-chr1:67565692..67568839,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1orf141-1	chr1:67558078-67562004	NONHSAT003771

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56155188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58274846	0.86[AFR][1000 genomes]
rs72676005	0.97[EUR][1000 genomes]
rs72676015	1.00[EUR][1000 genomes]
rs72676028	0.91[EUR][1000 genomes]
rs72676037	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67555000-67563000	Weak transcription	K562	blood
2	chr1:67560200-67562000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:67561400-67562600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:67561400-67563000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:67561400-67563000	Weak transcription	HMEC	breast
6	chr1:67561600-67562600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:67561600-67563000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:67561600-67563200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:67561600-67563800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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