Variant report

Variant	rs60553356
Chromosome Location	chr6:161100338-161100339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12174589	0.92[ASN][1000 genomes]
rs1406888	0.82[AMR][1000 genomes]
rs1590183	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1897106	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2314852	0.86[ASN][1000 genomes]
rs4110432	0.84[ASN][1000 genomes]
rs4252050	0.85[ASN][1000 genomes]
rs60171130	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62439764	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6455698	0.87[ASN][1000 genomes]
rs6935921	0.83[ASN][1000 genomes]
rs783144	0.87[ASN][1000 genomes]
rs9457995	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv605005	chr6:161069941-161152449	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161099400-161100600	Flanking Active TSS	Liver	Liver
2	chr6:161099600-161100800	Bivalent Enhancer	NHEK	skin
3	chr6:161099800-161100600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:161099800-161100600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:161099800-161100600	Flanking Active TSS	Esophagus	oesophagus
6	chr6:161099800-161100800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:161100000-161100400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
8	chr6:161100000-161100400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:161100000-161100400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:161100000-161100400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
11	chr6:161100000-161100400	Bivalent/Poised TSS	HepG2	liver
12	chr6:161100000-161100600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:161100000-161100600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
14	chr6:161100000-161100600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:161100000-161100600	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:161100000-161100600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:161100000-161100600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:161100000-161100600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:161100000-161100600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:161100000-161100600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:161100000-161100600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:161100000-161100600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:161100000-161100600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:161100000-161100600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
25	chr6:161100000-161100600	Bivalent Enhancer	Placenta	Placenta
26	chr6:161100000-161100600	Flanking Active TSS	Pancreas	Pancrea
27	chr6:161100000-161100800	Bivalent/Poised TSS	Fetal Brain Female	brain
28	chr6:161100200-161100400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:161100200-161100400	Bivalent Enhancer	Fetal Brain Male	brain
30	chr6:161100200-161100400	Flanking Active TSS	Gastric	stomach
31	chr6:161100200-161100400	Bivalent Enhancer	Left Ventricle	heart
32	chr6:161100200-161100600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:161100200-161100600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:161100200-161100600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:161100200-161100600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:161100200-161100600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr6:161100200-161100600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:161100200-161100600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:161100200-161100600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
40	chr6:161100200-161100600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr6:161100200-161100600	Bivalent Enhancer	Fetal Muscle Leg	muscle
42	chr6:161100200-161100600	Bivalent Enhancer	Fetal Stomach	stomach
43	chr6:161100200-161100600	Enhancers	Ovary	ovary
44	chr6:161100200-161100600	Genic enhancers	Right Atrium	heart
45	chr6:161100200-161100600	Bivalent Enhancer	Right Ventricle	heart
46	chr6:161100200-161100600	Active TSS	Stomach Smooth Muscle	stomach
47	chr6:161100200-161100800	Bivalent/Poised TSS	Fetal Intestine Large	intestine

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