Variant report

Variant	rs60556260
Chromosome Location	chr3:112451336-112451337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11918463	1.00[EUR][1000 genomes]
rs11919852	1.00[EUR][1000 genomes]
rs11921634	1.00[EUR][1000 genomes]
rs11921697	1.00[EUR][1000 genomes]
rs11923569	1.00[EUR][1000 genomes]
rs11923995	1.00[EUR][1000 genomes]
rs56874152	1.00[EUR][1000 genomes]
rs58317173	1.00[EUR][1000 genomes]
rs59235825	1.00[EUR][1000 genomes]
rs59242272	1.00[EUR][1000 genomes]
rs60293452	1.00[EUR][1000 genomes]
rs61735902	1.00[EUR][1000 genomes]
rs61738676	1.00[EUR][1000 genomes]
rs6780504	1.00[EUR][1000 genomes]
rs6780780	1.00[EUR][1000 genomes]
rs6799989	1.00[EUR][1000 genomes]
rs6805160	1.00[EUR][1000 genomes]
rs72942070	1.00[EUR][1000 genomes]
rs72948480	1.00[EUR][1000 genomes]
rs72948495	1.00[EUR][1000 genomes]
rs72950317	1.00[EUR][1000 genomes]
rs72950381	1.00[EUR][1000 genomes]
rs72950401	1.00[EUR][1000 genomes]
rs7617497	1.00[EUR][1000 genomes]
rs7624917	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112449600-112451400	Enhancers	HMEC	breast
2	chr3:112449800-112451400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:112450400-112451600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:112450600-112451600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:112450600-112451800	Enhancers	Placenta	Placenta
6	chr3:112450800-112451800	Enhancers	NHEK	skin
7	chr3:112451000-112451400	Weak transcription	HSMMtube	muscle
8	chr3:112451200-112452600	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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