Variant report

Variant	rs60566606
Chromosome Location	chr7:140352664-140352665
allele	-/TTTTTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140176559..140178160-chr7:140351087..140353237,2	K562	blood:
2	chr7:140217465..140218703-chr7:140352465..140353922,9	MCF-7	breast:
3	chr7:140347403..140349071-chr7:140352045..140353998,2	MCF-7	breast:
4	chr7:140174451..140177169-chr7:140352584..140355463,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3371832	chr7:140352483-140356781	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140341600-140353000	Weak transcription	Ovary	ovary
2	chr7:140341800-140355800	Weak transcription	Right Atrium	heart
3	chr7:140347000-140355800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:140347200-140353000	Weak transcription	Fetal Stomach	stomach
5	chr7:140347400-140353000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:140347400-140353000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:140347400-140353000	Weak transcription	Brain Anterior Caudate	brain
8	chr7:140347400-140353000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:140347600-140353000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:140347600-140353000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:140347600-140353000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:140347600-140353000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr7:140347600-140353000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:140347600-140353000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:140347600-140353000	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:140347600-140353000	Weak transcription	Fetal Kidney	kidney
17	chr7:140347600-140353000	Weak transcription	Fetal Lung	lung
18	chr7:140347600-140353000	Weak transcription	NHLF	lung
19	chr7:140347600-140353200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:140347600-140353200	Weak transcription	Brain Substantia Nigra	brain
21	chr7:140347800-140353000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:140349200-140353400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:140349600-140355400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr7:140349600-140355400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr7:140349800-140353000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:140349800-140353000	Weak transcription	Osteobl	bone
27	chr7:140350000-140353000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:140350600-140353000	Weak transcription	Left Ventricle	heart
29	chr7:140350600-140353000	Weak transcription	Right Ventricle	heart
30	chr7:140351200-140353000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:140351200-140354200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:140351600-140353000	Weak transcription	A549	lung
33	chr7:140351600-140353200	Weak transcription	Stomach Mucosa	stomach
34	chr7:140351800-140352800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr7:140351800-140353000	Weak transcription	Fetal Heart	heart
36	chr7:140351800-140353000	Weak transcription	NHEK	skin
37	chr7:140351800-140356000	Weak transcription	HMEC	breast
38	chr7:140351800-140356200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:140351800-140358000	Weak transcription	Gastric	stomach
40	chr7:140352000-140353000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:140352000-140353000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:140352000-140356000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:140352400-140352800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:140352400-140352800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:140352400-140353400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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