Variant report

Variant	rs60566890
Chromosome Location	chr6:24304897-24304898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11965389	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3891317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57212724	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57694040	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58380979	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60204333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61302362	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396009	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396023	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396027	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751141	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
3	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:24302400-24307800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:24302600-24307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:24302600-24308000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:24303000-24310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:24303200-24306200	Weak transcription	A549	lung
9	chr6:24303200-24308000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:24303800-24306400	Weak transcription	HepG2	liver
11	chr6:24304000-24308000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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