Variant report

Variant	rs60567115
Chromosome Location	chr8:60222369-60222370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73262008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv972528	chr8:60221258-60225226	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60218800-60223000	Enhancers	Dnd41	blood
2	chr8:60219400-60222600	Weak transcription	Brain Germinal Matrix	brain
3	chr8:60220000-60226800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:60220800-60224400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:60221000-60227400	Weak transcription	Psoas Muscle	Psoas
6	chr8:60221200-60223200	Enhancers	Fetal Brain Female	brain
7	chr8:60221600-60222600	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:60221800-60225000	Enhancers	Fetal Brain Male	brain
9	chr8:60221800-60229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:60222000-60222400	Enhancers	Fetal Lung	lung
11	chr8:60222200-60222600	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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