Variant report

Variant	rs60577464
Chromosome Location	chr3:59761081-59761082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17295225	1.00[ASN][1000 genomes]
rs2166790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55711835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56102180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57271892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57877343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58452146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58480008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58644851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59219532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59789315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60129549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61140668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772278	1.00[EUR][1000 genomes]
rs6786186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73837797	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73837801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840816	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840817	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73840822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73840823	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780367	1.00[ASN][1000 genomes]
rs780369	1.00[ASN][1000 genomes]
rs9681919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
2	chr3:59756400-59761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:59756600-59761200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:59757200-59761200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:59757800-59762200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:59758000-59761200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:59759000-59761600	Enhancers	HSMM	muscle
9	chr3:59759000-59762800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:59759200-59761200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:59759200-59761200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:59759200-59761800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:59759400-59761600	Enhancers	HSMMtube	muscle
14	chr3:59759400-59761800	Enhancers	Brain Germinal Matrix	brain
15	chr3:59759400-59762800	Weak transcription	Primary B cells from cord blood	blood
16	chr3:59759400-59765200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:59759600-59762200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr3:59759600-59762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:59759600-59763000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:59759600-59763000	Enhancers	Dnd41	blood
21	chr3:59759600-59763200	Weak transcription	GM12878-XiMat	blood
22	chr3:59759800-59761200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:59759800-59761200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:59759800-59761200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:59759800-59761200	Enhancers	HMEC	breast
26	chr3:59759800-59761400	Enhancers	Osteobl	bone
27	chr3:59759800-59761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:59759800-59762400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr3:59760200-59762000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:59760400-59761800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:59760400-59776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:59760800-59762400	Weak transcription	Primary T cells from cord blood	blood
33	chr3:59761000-59761400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:59761000-59761400	Enhancers	NH-A	brain
35	chr3:59761000-59764200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:59761000-59772400	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links