Variant report

Variant	rs60577654
Chromosome Location	chr8:119485755-119485756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16891015	1.00[AMR][1000 genomes]
rs16891018	1.00[AMR][1000 genomes]
rs56066957	1.00[AMR][1000 genomes]
rs56118719	1.00[AMR][1000 genomes]
rs60660635	1.00[AMR][1000 genomes]
rs60842367	1.00[AMR][1000 genomes]
rs73311726	1.00[AMR][1000 genomes]
rs73313473	1.00[AMR][1000 genomes]
rs73327506	1.00[AMR][1000 genomes]
rs73327547	1.00[AMR][1000 genomes]
rs73708329	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708490	1.00[AMR][1000 genomes]
rs73708495	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119480800-119488400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:119481200-119485800	Weak transcription	GM12878-XiMat	blood
3	chr8:119481600-119488000	Weak transcription	Brain Substantia Nigra	brain
4	chr8:119484600-119486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:119484600-119486000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:119484600-119486000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:119484800-119485800	Enhancers	Osteobl	bone
8	chr8:119484800-119486000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:119485000-119485800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:119485000-119486000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:119485000-119486000	Enhancers	Hela-S3	cervix
12	chr8:119485000-119486000	Enhancers	NH-A	brain
13	chr8:119485200-119485800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:119485200-119486000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:119485200-119486000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:119485200-119486000	Enhancers	Right Atrium	heart
17	chr8:119485200-119486200	Enhancers	Brain Angular Gyrus	brain
18	chr8:119485200-119486200	Enhancers	Fetal Lung	lung
19	chr8:119485400-119485800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:119485400-119488400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:119485600-119486000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:119485600-119488200	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:119485600-119488200	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links