Variant report

Variant	rs60578339
Chromosome Location	chr2:48766961-48766962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4464333	1.00[AMR][1000 genomes]
rs4952913	1.00[AMR][1000 genomes]
rs60255199	1.00[AFR][1000 genomes]
rs6545040	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005954	chr2:48692696-48905723	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535682	chr2:48692696-48905723	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv833981	chr2:48705444-48878179	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1007491	chr2:48752185-48796441	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv535683	chr2:48752185-48796441	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv581776	chr2:48763382-48913019	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1000419	chr2:48766957-48795327	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48758800-48769000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:48758800-48772400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr2:48759000-48772600	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:48759000-48775200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:48759000-48787000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:48759000-48787400	Weak transcription	Psoas Muscle	Psoas
7	chr2:48759000-48827600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:48759200-48767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:48759200-48793200	Weak transcription	Fetal Lung	lung
10	chr2:48759400-48767000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:48759400-48775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:48760000-48770800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:48760000-48771000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr2:48760000-48772000	Weak transcription	Lung	lung
15	chr2:48760000-48772400	Weak transcription	Right Atrium	heart
16	chr2:48760200-48767000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:48760200-48767000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:48760400-48767400	Weak transcription	Ovary	ovary
19	chr2:48760400-48772800	Weak transcription	Left Ventricle	heart
20	chr2:48762000-48767000	Weak transcription	Placenta	Placenta
21	chr2:48762200-48767600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr2:48762400-48767400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:48762600-48769000	Weak transcription	Colon Smooth Muscle	Colon
24	chr2:48762600-48775000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:48762800-48767000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:48763400-48769000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr2:48764800-48768000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:48765200-48767200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:48765600-48767200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:48766000-48768600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:48766200-48767200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:48766200-48769000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:48766800-48767800	Strong transcription	Fetal Stomach	stomach
34	chr2:48766800-48779600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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