Variant report

Variant	rs60586356
Chromosome Location	chr3:24421315-24421316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24417175..24419613-chr3:24421203..24423602,2	K562	blood:
2	chr3:24413191..24415623-chr3:24419821..24421904,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11129151	0.96[EUR][1000 genomes]
rs11919155	0.85[ASN][1000 genomes]
rs11920973	0.96[EUR][1000 genomes]
rs13324127	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4484144	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
3	chr3:24414200-24423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:24416600-24421600	Weak transcription	Fetal Kidney	kidney
5	chr3:24417800-24422000	Enhancers	K562	blood
6	chr3:24418000-24429200	Weak transcription	Right Ventricle	heart
7	chr3:24418000-24429800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:24418000-24430000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:24418200-24421400	Weak transcription	Stomach Mucosa	stomach
10	chr3:24418200-24429200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:24418200-24429800	Weak transcription	Fetal Lung	lung
12	chr3:24419000-24429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:24419000-24429000	Weak transcription	Pancreas	Pancrea
14	chr3:24419000-24429200	Weak transcription	Left Ventricle	heart
15	chr3:24420200-24426800	Weak transcription	Aorta	Aorta
16	chr3:24420200-24426800	Weak transcription	Fetal Intestine Large	intestine
17	chr3:24420200-24441600	Weak transcription	Liver	Liver
18	chr3:24420600-24422000	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:24420600-24423400	Enhancers	Colon Smooth Muscle	Colon
20	chr3:24420600-24427800	Weak transcription	Fetal Intestine Small	intestine
21	chr3:24421000-24421400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:24421000-24421800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr3:24421000-24422000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:24421200-24421800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:24421200-24421800	Enhancers	NHEK	skin
26	chr3:24421200-24422000	Weak transcription	Right Atrium	heart
27	chr3:24421200-24422000	Enhancers	HMEC	breast
28	chr3:24421200-24429000	Weak transcription	Psoas Muscle	Psoas
29	chr3:24421200-24429800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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