Variant report

Variant	rs60594184
Chromosome Location	chr21:17350448-17350449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11911790	1.00[EUR][1000 genomes]
rs2823523	1.00[EUR][1000 genomes]
rs34310172	1.00[EUR][1000 genomes]
rs73357280	1.00[EUR][1000 genomes]
rs73892558	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17348000-17350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr21:17349600-17351800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr21:17350000-17351000	Enhancers	Hela-S3	cervix
4	chr21:17350200-17351400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr21:17350200-17352000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr21:17350400-17350800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr21:17350400-17350800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr21:17350400-17351400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr21:17350400-17351400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr21:17350400-17351400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr21:17350400-17351400	Enhancers	Fetal Kidney	kidney
12	chr21:17350400-17351400	Enhancers	Osteobl	bone
13	chr21:17350400-17352400	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links