Variant report

Variant	rs60598097
Chromosome Location	chr11:36169326-36169327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12271981	0.83[AMR][1000 genomes]
rs12278309	0.83[AMR][1000 genomes]
rs12289984	0.83[AMR][1000 genomes]
rs12291281	0.83[AMR][1000 genomes]
rs12291429	0.83[AMR][1000 genomes]
rs12291497	0.83[AMR][1000 genomes]
rs12785650	0.83[AMR][1000 genomes]
rs12785820	0.83[AMR][1000 genomes]
rs12786107	0.83[AMR][1000 genomes]
rs12791048	0.83[AMR][1000 genomes]
rs12792616	0.83[AMR][1000 genomes]
rs12794494	0.83[AMR][1000 genomes]
rs12802606	0.83[AMR][1000 genomes]
rs12802983	0.83[AMR][1000 genomes]
rs12807726	0.83[AMR][1000 genomes]
rs12808224	0.83[AMR][1000 genomes]
rs12808874	0.83[AMR][1000 genomes]
rs34016181	0.83[AMR][1000 genomes]
rs34860482	0.83[AMR][1000 genomes]
rs34972611	0.83[AMR][1000 genomes]
rs35122223	0.83[AMR][1000 genomes]
rs35873090	0.83[AMR][1000 genomes]
rs35999024	0.83[AMR][1000 genomes]
rs36036155	0.83[AMR][1000 genomes]
rs56860164	0.83[AMR][1000 genomes]
rs61518528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66503254	0.83[AMR][1000 genomes]
rs73437285	0.83[AMR][1000 genomes]
rs73437288	1.00[AMR][1000 genomes]
rs953124	0.83[AMR][1000 genomes]
rs953125	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv897226	chr11:36139934-36169869	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36137800-36171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36145400-36170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:36150000-36170000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:36154200-36170600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:36154200-36171000	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:36154400-36170800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:36154600-36171000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:36157000-36171200	Weak transcription	Ovary	ovary
9	chr11:36161800-36169800	Weak transcription	HSMM	muscle
10	chr11:36163800-36171000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:36163800-36176800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:36164000-36171200	Weak transcription	Fetal Stomach	stomach
13	chr11:36164600-36170000	Weak transcription	K562	blood
14	chr11:36164800-36170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:36164800-36171000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:36164800-36174600	Weak transcription	Fetal Kidney	kidney
17	chr11:36165000-36170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:36165400-36170200	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:36165400-36170600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:36165400-36170800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:36165400-36171000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:36165400-36171000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:36165400-36171000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:36165400-36171000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:36165400-36171200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:36167400-36169400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:36167600-36171000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:36167600-36173600	Enhancers	HMEC	breast
29	chr11:36167800-36170000	Weak transcription	HSMMtube	muscle
30	chr11:36168000-36170600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:36168000-36171000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:36168000-36174600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:36168200-36169400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:36168200-36170400	Weak transcription	A549	lung
35	chr11:36168200-36170800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:36168200-36171000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:36168200-36171000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:36168600-36170000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:36168600-36170200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:36168600-36170800	Weak transcription	Placenta	Placenta
41	chr11:36168800-36169600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:36169000-36169400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:36169000-36169400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:36169000-36169400	Enhancers	Hela-S3	cervix
45	chr11:36169000-36169600	Enhancers	Muscle Satellite Cultured Cells	--
46	chr11:36169000-36170400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:36169000-36175000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:36169000-36178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:36169200-36169400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:36169200-36169600	Weak transcription	NHEK	skin

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