Variant report

Variant	rs60599665
Chromosome Location	chr6:164570792-164570793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7738863	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9355462	0.96[ASN][1000 genomes]
rs9364720	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv830860	chr6:164553614-164744191	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164563800-164571200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:164564000-164571000	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:164564000-164571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:164564000-164571200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:164564000-164571400	Weak transcription	Fetal Brain Male	brain
6	chr6:164569400-164571200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:164569400-164573200	Enhancers	Fetal Heart	heart
8	chr6:164569600-164570800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:164569600-164570800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:164570000-164571000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:164570000-164573000	Weak transcription	HSMM	muscle
12	chr6:164570200-164571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:164570400-164573000	Enhancers	Fetal Muscle Leg	muscle
14	chr6:164570600-164572000	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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