Variant report

Variant	rs606038
Chromosome Location	chr18:40204410-40204411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:145382149..145384906-chr18:40203578..40206564,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233396	Chromatin interaction
ENSG00000201558	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2051335	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051336	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051337	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163385	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28369538	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28533998	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28536485	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28595883	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28706225	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs627641	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636635	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs679345	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs681130	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714297	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7236977	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7240663	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9947001	0.81[EUR][1000 genomes]
rs9947998	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9954277	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9957941	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9960125	0.81[EUR][1000 genomes]
rs9960642	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9961695	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9962201	0.81[EUR][1000 genomes]
rs9964272	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9966233	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9966488	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9966845	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40204000-40206000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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