Variant report

Variant	rs60605202
Chromosome Location	chr1:169086616-169086617
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58330569	1.00[AMR][1000 genomes]
rs73033741	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169079800-169094600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:169079800-169105800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:169080200-169088800	Genic enhancers	Hela-S3	cervix
4	chr1:169080200-169089800	Genic enhancers	Fetal Intestine Large	intestine
5	chr1:169081000-169098200	Weak transcription	Small Intestine	intestine
6	chr1:169081200-169091800	Strong transcription	Fetal Brain Female	brain
7	chr1:169082200-169097600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:169082400-169097400	Weak transcription	Fetal Thymus	thymus
9	chr1:169083000-169087600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
10	chr1:169083400-169088600	Weak transcription	HSMMtube	muscle
11	chr1:169083400-169090400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:169083600-169094600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:169084000-169088400	Weak transcription	NHDF-Ad	bronchial
14	chr1:169084000-169088800	Weak transcription	Ovary	ovary
15	chr1:169084000-169094000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:169084200-169099200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:169084600-169086800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:169084600-169087800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:169084800-169087000	Enhancers	HMEC	breast
20	chr1:169084800-169089600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:169085000-169087000	Strong transcription	Dnd41	blood
22	chr1:169085000-169087800	Genic enhancers	Left Ventricle	heart
23	chr1:169085000-169089600	Transcr. at gene 5' and 3'	A549	lung
24	chr1:169085200-169086800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:169085200-169087000	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
26	chr1:169085200-169087800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:169085200-169087800	Strong transcription	HUVEC	blood vessel
28	chr1:169085200-169088400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr1:169085400-169087400	Weak transcription	Psoas Muscle	Psoas
30	chr1:169085400-169090800	Enhancers	NHLF	lung
31	chr1:169085400-169091000	Genic enhancers	HepG2	liver
32	chr1:169085400-169097600	Weak transcription	Fetal Brain Male	brain
33	chr1:169085400-169102200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:169085600-169086800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:169085600-169086800	Genic enhancers	Gastric	stomach
36	chr1:169085600-169086800	Weak transcription	NH-A	brain
37	chr1:169085600-169087000	Genic enhancers	Fetal Lung	lung
38	chr1:169085600-169087400	Weak transcription	Fetal Kidney	kidney
39	chr1:169085600-169087600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr1:169085600-169087600	Strong transcription	Right Ventricle	heart
41	chr1:169085600-169087800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr1:169085600-169088200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr1:169085600-169088200	Weak transcription	Osteobl	bone
44	chr1:169085600-169088400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:169085600-169088400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:169085600-169088800	Weak transcription	K562	blood
47	chr1:169085600-169089200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr1:169085600-169090400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:169085600-169090800	Weak transcription	Lung	lung
50	chr1:169085600-169091000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links