Variant report

Variant	rs60607655
Chromosome Location	chr15:33744427-33744428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57838828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58384490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59656301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043179	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33732800-33746600	Weak transcription	Aorta	Aorta
2	chr15:33733400-33746000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:33740400-33744600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:33741600-33744600	Enhancers	NHEK	skin
5	chr15:33741600-33765400	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:33742200-33748800	Weak transcription	Esophagus	oesophagus
7	chr15:33742800-33744600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:33742800-33744600	Enhancers	HMEC	breast
9	chr15:33743000-33744600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr15:33743000-33745200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:33743200-33746800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:33743800-33745400	Weak transcription	Fetal Kidney	kidney
13	chr15:33744200-33744600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr15:33744400-33746200	Weak transcription	Psoas Muscle	Psoas
15	chr15:33744400-33750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:33744400-33750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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