Variant report

Variant	rs60608708
Chromosome Location	chr5:43085087-43085088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43077895..43080643-chr5:43081043..43085199,4	MCF-7	breast:
2	chr5:43073445..43076704-chr5:43084817..43087387,3	K562	blood:
3	chr5:43083087..43086074-chr5:43102781..43107295,4	K562	blood:
4	chr5:43079603..43082656-chr5:43083064..43086134,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10041654	0.82[AFR][1000 genomes]
rs10051990	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10052644	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10054331	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10056822	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10071791	1.00[EUR][1000 genomes]
rs10077219	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1122510	1.00[EUR][1000 genomes]
rs13357786	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13360205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28490330	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28573681	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28609175	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28628732	0.84[EUR][1000 genomes]
rs56917209	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58980582	0.92[EUR][1000 genomes]
rs6451664	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6451666	0.92[EUR][1000 genomes]
rs6451670	0.96[EUR][1000 genomes]
rs6858989	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6862276	0.83[AFR][1000 genomes]
rs6886503	1.00[EUR][1000 genomes]
rs7720810	0.85[AMR][1000 genomes]
rs7728625	0.88[EUR][1000 genomes]
rs9292865	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
7	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
8	nsv870299	chr5:43053679-43107880	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43069400-43087400	Weak transcription	Stomach Mucosa	stomach
2	chr5:43070000-43105400	Weak transcription	HSMMtube	muscle
3	chr5:43071800-43091000	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:43071800-43091600	Weak transcription	Ovary	ovary
5	chr5:43071800-43096000	Weak transcription	Aorta	Aorta
6	chr5:43071800-43098400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:43071800-43101600	Weak transcription	Esophagus	oesophagus
8	chr5:43071800-43105400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:43072400-43104200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:43075600-43096600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:43075600-43101600	Weak transcription	Left Ventricle	heart
12	chr5:43075600-43105000	Weak transcription	NHLF	lung
13	chr5:43075600-43105400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:43075600-43105400	Weak transcription	Psoas Muscle	Psoas
15	chr5:43075800-43096200	Weak transcription	Lung	lung
16	chr5:43075800-43103000	Weak transcription	Spleen	Spleen
17	chr5:43075800-43105400	Weak transcription	Right Ventricle	heart
18	chr5:43075800-43105600	Weak transcription	Pancreas	Pancrea
19	chr5:43076000-43086000	Weak transcription	HUVEC	blood vessel
20	chr5:43076000-43104200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr5:43076200-43096400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:43076200-43105400	Weak transcription	Brain Angular Gyrus	brain
23	chr5:43076400-43093400	Weak transcription	GM12878-XiMat	blood
24	chr5:43076400-43099800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:43076600-43092800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:43076600-43096600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:43077800-43104600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:43078600-43104200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:43079400-43089600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:43079400-43105400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr5:43080200-43105600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:43080400-43091000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr5:43080800-43089400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:43080800-43104600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:43081000-43105600	Weak transcription	Brain Germinal Matrix	brain
36	chr5:43081200-43091000	Weak transcription	Placenta	Placenta
37	chr5:43081200-43093200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:43081200-43105400	Weak transcription	Brain Substantia Nigra	brain
39	chr5:43081200-43105400	Weak transcription	NHDF-Ad	bronchial
40	chr5:43081400-43086200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr5:43081400-43092800	Weak transcription	Adipose Nuclei	Adipose
42	chr5:43081400-43093600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:43081400-43105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr5:43081400-43105400	Weak transcription	Brain Anterior Caudate	brain
45	chr5:43081400-43105400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr5:43081600-43096200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr5:43081800-43105400	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:43081800-43105400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:43082000-43091000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr5:43082000-43105400	Weak transcription	Liver	Liver

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