Variant report

Variant	rs60608782
Chromosome Location	chr10:93132853-93132854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56996606	1.00[EUR][1000 genomes]
rs58092050	1.00[EUR][1000 genomes]
rs58377848	1.00[EUR][1000 genomes]
rs60829821	1.00[EUR][1000 genomes]
rs74150650	1.00[EUR][1000 genomes]
rs74150652	0.86[AFR][1000 genomes]
rs74150654	0.86[AFR][1000 genomes]
rs74150655	0.86[AFR][1000 genomes]
rs74150658	1.00[EUR][1000 genomes]
rs74150662	1.00[EUR][1000 genomes]
rs74150667	0.86[AFR][1000 genomes]
rs7908999	1.00[EUR][1000 genomes]
rs7909381	1.00[EUR][1000 genomes]
rs7909527	1.00[EUR][1000 genomes]
rs7919744	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975077	chr10:93126653-93133345	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93113800-93136600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links