Variant report

Variant	rs60614489
Chromosome Location	chr3:135986978-135986979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135912197..135914023-chr3:135984563..135987150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs67214626	0.89[AMR][1000 genomes]
rs6785225	0.87[AMR][1000 genomes]
rs9843348	0.84[AMR][1000 genomes]
rs9843801	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970200-135996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:135970400-135995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:135970600-135987600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:135970600-135998800	Weak transcription	Fetal Brain Male	brain
5	chr3:135970600-135999200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:135970600-135999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:135970800-135995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:135970800-135998000	Weak transcription	Hela-S3	cervix
10	chr3:135974000-135989400	Strong transcription	Dnd41	blood
11	chr3:135974200-135989600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:135974200-135989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:135974400-135989600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:135974800-135997800	Weak transcription	Stomach Mucosa	stomach
15	chr3:135975200-135987800	Strong transcription	Fetal Intestine Large	intestine
16	chr3:135975800-135987200	Weak transcription	Thymus	Thymus
17	chr3:135976200-135996000	Weak transcription	Pancreas	Pancrea
18	chr3:135976200-135999400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:135976200-136012400	Weak transcription	NHLF	lung
20	chr3:135976200-136016400	Weak transcription	Colonic Mucosa	Colon
21	chr3:135976200-136021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:135976400-135989000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:135977400-135995600	Weak transcription	Fetal Lung	lung
24	chr3:135977400-135996000	Weak transcription	K562	blood
25	chr3:135977600-135995400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:135977800-135993600	Weak transcription	Fetal Kidney	kidney
27	chr3:135980400-135988000	Strong transcription	Fetal Intestine Small	intestine
28	chr3:135980800-135995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:135980800-135995600	Weak transcription	Right Ventricle	heart
30	chr3:135980800-135997600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:135980800-135999200	Weak transcription	Small Intestine	intestine
32	chr3:135981000-135987600	Weak transcription	Fetal Brain Female	brain
33	chr3:135981000-135995200	Weak transcription	Brain Germinal Matrix	brain
34	chr3:135981000-135995400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr3:135981000-135995400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:135981000-135998600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:135981200-135999200	Weak transcription	NHDF-Ad	bronchial
38	chr3:135981200-136052000	Weak transcription	NH-A	brain
39	chr3:135981600-135995000	Weak transcription	Psoas Muscle	Psoas
40	chr3:135981600-135995200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr3:135981600-135997200	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:135981600-135998000	Weak transcription	Fetal Heart	heart
43	chr3:135981600-135998800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:135981600-136020400	Weak transcription	HUVEC	blood vessel
45	chr3:135981800-135995000	Weak transcription	Brain Substantia Nigra	brain
46	chr3:135981800-135995600	Weak transcription	Gastric	stomach
47	chr3:135981800-135999600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr3:135982400-135987800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:135982400-135995200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:135982600-135991400	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links