Variant report

Variant	rs606149
Chromosome Location	chr1:193921548-193921549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs591844	0.87[ASN][1000 genomes]
rs602998	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Major depressive disorder	20516156	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs606149	TROVE2	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193921200-193921600	Enhancers	Right Ventricle	heart
2	chr1:193921200-193921800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:193921200-193921800	Enhancers	Adipose Nuclei	Adipose
4	chr1:193921200-193921800	Enhancers	Liver	Liver
5	chr1:193921200-193921800	Enhancers	Fetal Brain Male	brain
6	chr1:193921200-193921800	Enhancers	Fetal Intestine Large	intestine
7	chr1:193921200-193921800	Enhancers	Fetal Intestine Small	intestine
8	chr1:193921200-193921800	Enhancers	Left Ventricle	heart
9	chr1:193921200-193921800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:193921200-193921800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr1:193921200-193922400	Enhancers	Fetal Heart	heart
12	chr1:193921200-193922400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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