Variant report

Variant	rs60623501
Chromosome Location	chr7:104004063-104004064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12534139	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12539370	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2188492	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104001600-104005200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:104002400-104005200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:104002600-104004200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:104002800-104005200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:104002800-104005400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:104003000-104005000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:104003000-104005000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:104003200-104004600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:104003200-104004800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:104003200-104005200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:104003400-104004200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:104003600-104005200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:104003800-104004800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:104003800-104005400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:104004000-104004200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:104004000-104004200	Enhancers	Brain Hippocampus Middle	brain
17	chr7:104004000-104004600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:104004000-104005000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:104004000-104005600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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