Variant report

Variant	rs60623903
Chromosome Location	chr16:71316789-71316790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71313544..71318343-chr16:71321289..71325664,12	K562	blood:
2	chr16:71314219..71316960-chr2:160471976..160473993,2	MCF-7	breast:
3	chr16:71315560..71317453-chr16:71317463..71319154,3	MCF-7	breast:
4	chr16:71310986..71313329-chr16:71316172..71318464,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180917	Chromatin interaction
ENSG00000123636	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10438559	0.99[AFR][1000 genomes]
rs58157908	0.97[AFR][1000 genomes]
rs60490099	0.95[AFR][1000 genomes]
rs60929466	0.91[AFR][1000 genomes]
rs6499499	0.83[AFR][1000 genomes]
rs7194248	0.95[AFR][1000 genomes]
rs7196435	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758429	chr16:70807122-71316983	Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv2758653	chr16:70807122-71316983	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71290200-71317200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr16:71299000-71317200	Weak transcription	Aorta	Aorta
3	chr16:71301000-71318400	Weak transcription	Pancreas	Pancrea
4	chr16:71306600-71322600	Weak transcription	Small Intestine	intestine
5	chr16:71307000-71317000	Weak transcription	NHEK	skin
6	chr16:71307800-71316800	Weak transcription	Left Ventricle	heart
7	chr16:71307800-71318600	Weak transcription	Psoas Muscle	Psoas
8	chr16:71308400-71317000	Weak transcription	Dnd41	blood
9	chr16:71309200-71317200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr16:71310400-71318800	Weak transcription	Thymus	Thymus
11	chr16:71310800-71317000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr16:71311000-71316800	Weak transcription	Primary B cells from cord blood	blood
13	chr16:71311000-71317000	Weak transcription	Primary T cells from cord blood	blood
14	chr16:71311000-71317600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr16:71311200-71317000	Weak transcription	GM12878-XiMat	blood
16	chr16:71311200-71317400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr16:71311400-71316800	Weak transcription	K562	blood
18	chr16:71311400-71317000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr16:71313400-71317200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr16:71313600-71317200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr16:71314000-71316800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr16:71314000-71317000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr16:71314000-71317200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:71314400-71317000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr16:71314400-71317000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr16:71314600-71316800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr16:71314600-71316800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr16:71314600-71316800	Weak transcription	Brain Germinal Matrix	brain
29	chr16:71314600-71316800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr16:71314600-71317000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr16:71314600-71317200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:71314800-71317200	Weak transcription	Fetal Kidney	kidney
33	chr16:71315000-71316800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr16:71315000-71316800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr16:71315200-71316800	Weak transcription	Fetal Lung	lung
36	chr16:71315200-71317000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr16:71315200-71317000	Weak transcription	Liver	Liver
38	chr16:71315200-71317000	Weak transcription	Brain Anterior Caudate	brain
39	chr16:71315200-71317000	Weak transcription	Fetal Brain Female	brain
40	chr16:71315200-71317000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr16:71315200-71317000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr16:71315200-71317200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr16:71315200-71317400	Weak transcription	NH-A	brain
44	chr16:71315200-71317800	Weak transcription	NHDF-Ad	bronchial
45	chr16:71315400-71317000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr16:71315400-71317000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr16:71315400-71317000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr16:71315400-71317000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr16:71315400-71317000	Weak transcription	Placenta	Placenta
50	chr16:71315400-71317000	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links