Variant report

Variant	rs60633557
Chromosome Location	chr6:110035148-110035149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:110035089-110036595	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
FIG4	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6942351	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110057000	Weak transcription	Left Ventricle	heart
2	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
3	chr6:110013200-110057000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:110013200-110057000	Weak transcription	Aorta	Aorta
5	chr6:110013400-110038600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:110013600-110056000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:110013600-110056800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:110024200-110038800	Weak transcription	Thymus	Thymus
9	chr6:110024200-110056400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:110025000-110057000	Weak transcription	Fetal Thymus	thymus
11	chr6:110027000-110038200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:110027000-110040400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:110027000-110052400	Weak transcription	Liver	Liver
14	chr6:110027000-110056400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:110027600-110038600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:110027800-110038200	Weak transcription	Placenta	Placenta
17	chr6:110028000-110036800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:110028000-110038000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:110028000-110044000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:110028000-110071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:110028200-110036200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:110028200-110036200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:110028200-110036800	Weak transcription	Adipose Nuclei	Adipose
24	chr6:110028200-110037600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:110028200-110057200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:110028200-110080800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:110029000-110036600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:110030000-110035400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:110033200-110041000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:110034200-110035200	Enhancers	Esophagus	oesophagus
31	chr6:110034200-110035200	Genic enhancers	Spleen	Spleen
32	chr6:110034200-110035400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:110034200-110035400	Enhancers	Pancreas	Pancrea
34	chr6:110034200-110035600	Enhancers	Gastric	stomach
35	chr6:110034200-110039400	Strong transcription	Primary T cells from cord blood	blood
36	chr6:110034400-110035200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:110034400-110035400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:110034400-110035400	Enhancers	Brain Germinal Matrix	brain
39	chr6:110034400-110041600	Weak transcription	Brain Substantia Nigra	brain
40	chr6:110034400-110042200	Weak transcription	NHLF	lung
41	chr6:110034400-110044400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:110034400-110060800	Weak transcription	Fetal Stomach	stomach
43	chr6:110034600-110035600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:110034600-110035600	Enhancers	Ovary	ovary
45	chr6:110034600-110037600	Weak transcription	Fetal Intestine Large	intestine
46	chr6:110034600-110041600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:110034600-110041800	Weak transcription	NHDF-Ad	bronchial
48	chr6:110034600-110046600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:110034600-110056400	Weak transcription	Fetal Brain Female	brain
50	chr6:110034600-110057000	Weak transcription	Brain Inferior Temporal Lobe	brain

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