Variant report

Variant	rs60635621
Chromosome Location	chr4:57396047-57396048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:57351069..57353367-chr4:57395076..57396585,2	K562	blood:
2	chr4:57332142..57335262-chr4:57394352..57398997,8	K562	blood:
3	chr4:57331783..57334990-chr4:57394745..57398997,7	K562	blood:
4	chr4:57299474..57303800-chr4:57395386..57399526,7	K562	blood:
5	chr4:57298757..57303397-chr4:57395270..57398462,7	K562	blood:

Variant related genes	Relation type
ENSG00000174780	Chromatin interaction
ENSG00000128050	Chromatin interaction
ENSG00000128059	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999639	chr4:56942917-57401310	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1014045	chr4:56942917-57404511	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv530121	chr4:57167367-57695576	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv829941	chr4:57359551-57553136	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv3447654	chr4:57395445-57397943	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57372600-57396200	Weak transcription	Aorta	Aorta
2	chr4:57373200-57396200	Weak transcription	Fetal Brain Female	brain
3	chr4:57373200-57396400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:57373600-57396200	Weak transcription	Brain Germinal Matrix	brain
5	chr4:57380200-57396200	Weak transcription	Left Ventricle	heart
6	chr4:57381600-57396200	Weak transcription	Right Atrium	heart
7	chr4:57389200-57396200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:57395400-57396200	Enhancers	Fetal Heart	heart
9	chr4:57395800-57396200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:57395800-57396200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:57395800-57396200	Enhancers	Brain Hippocampus Middle	brain
12	chr4:57395800-57396200	Enhancers	Colon Smooth Muscle	Colon
13	chr4:57395800-57396200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:57395800-57396200	Enhancers	K562	blood
15	chr4:57395800-57397200	Active TSS	Brain Anterior Caudate	brain
16	chr4:57396000-57396200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:57396000-57396200	Enhancers	Primary hematopoietic stem cells	blood
18	chr4:57396000-57396200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr4:57396000-57396200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:57396000-57396200	Enhancers	Adipose Nuclei	Adipose
21	chr4:57396000-57396200	Enhancers	Fetal Thymus	thymus
22	chr4:57396000-57396200	Enhancers	Stomach Smooth Muscle	stomach

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