Variant report
| Variant | rs60636413 |
|---|---|
| Chromosome Location | chr7:27764768-27764769 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229893 | Chromatin interaction |
| ENSG00000106052 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17155954 | 0.81[ASN][1000 genomes] |
| rs2299105 | 1.00[ASN][1000 genomes] |
| rs55901354 | 0.89[ASN][1000 genomes] |
| rs56916239 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56995723 | 1.00[ASN][1000 genomes] |
| rs58546705 | 0.91[ASN][1000 genomes] |
| rs58651394 | 0.89[ASN][1000 genomes] |
| rs59041966 | 0.89[ASN][1000 genomes] |
| rs59614135 | 0.82[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73684028 | 0.96[ASN][1000 genomes] |
| rs73684030 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73684035 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73684037 | 0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73684045 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73684048 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73684050 | 1.00[ASN][1000 genomes] |
| rs73684052 | 1.00[ASN][1000 genomes] |
| rs73684053 | 0.96[ASN][1000 genomes] |
| rs73684055 | 1.00[ASN][1000 genomes] |
| rs73684057 | 1.00[ASN][1000 genomes] |
| rs73684058 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949025 | chr7:27578167-28075172 | Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27760000-27778800 | Weak transcription | HSMMtube | muscle |
