Variant report

Variant	rs60639238
Chromosome Location	chr15:45686434-45686435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45606829..45607558-chr15:45685720..45686738,3	MCF-7	breast:
2	chr15:45599020..45599635-chr15:45685828..45686671,2	MCF-7	breast:
3	chr15:45685120..45688238-chr15:45691728..45694195,3	MCF-7	breast:
4	chr15:45591737..45593705-chr15:45686375..45689281,2	MCF-7	breast:
5	chr15:45681297..45682843-chr15:45685463..45687115,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16942796	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7175618	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9672959	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45679000-45693800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:45679400-45688800	Enhancers	Liver	Liver
3	chr15:45682800-45693800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:45683200-45686600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:45683200-45691600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:45685400-45687000	Active TSS	Fetal Intestine Large	intestine
7	chr15:45685600-45691800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr15:45685600-45692800	Weak transcription	GM12878-XiMat	blood
9	chr15:45685800-45688400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:45685800-45689600	Active TSS	Fetal Intestine Small	intestine
11	chr15:45686000-45686600	Enhancers	Pancreas	Pancrea
12	chr15:45686000-45687000	Enhancers	Brain Anterior Caudate	brain
13	chr15:45686000-45687000	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:45686000-45687000	Enhancers	Brain Hippocampus Middle	brain
15	chr15:45686000-45687000	Flanking Active TSS	HepG2	liver
16	chr15:45686000-45688800	Enhancers	Brain Substantia Nigra	brain
17	chr15:45686200-45686600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:45686200-45686800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:45686200-45687000	Enhancers	Ovary	ovary
20	chr15:45686200-45687200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:45686200-45688400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:45686200-45689600	Active TSS	Duodenum Mucosa	Duodenum
23	chr15:45686400-45686600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr15:45686400-45686800	Enhancers	NHEK	skin
25	chr15:45686400-45687000	Weak transcription	Left Ventricle	heart

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