Variant report

Variant	rs60640542
Chromosome Location	chr2:125846359-125846360
allele	-/ATAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10167742	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10178610	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10178941	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10192610	0.81[EUR][1000 genomes]
rs10201829	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11123081	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12466712	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12477887	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13393788	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1369525	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs314888	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs314912	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs314913	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs314914	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3924286	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4276033	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4359662	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4602234	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6541980	0.82[EUR][1000 genomes]
rs6717901	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6755508	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6761589	0.83[EUR][1000 genomes]
rs7572346	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7574129	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7587526	0.82[EUR][1000 genomes]
rs7602423	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv431646	chr2:125780602-126174341	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874992	chr2:125817682-126046421	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv963880	chr2:125844560-125848798	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125845600-125846600	Weak transcription	Liver	Liver

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