Variant report
Variant | rs6064127 |
---|---|
Chromosome Location | chr20:53491566-53491567 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:219260803..219263547-chr20:53489297..53491896,2 | MCF-7 | breast: | |
2 | chr20:53476868..53479575-chr20:53491320..53493490,2 | MCF-7 | breast: | |
3 | chr20:53486873..53489531-chr20:53490291..53491928,2 | MCF-7 | breast: | |
4 | chr20:53488399..53491672-chr20:53492910..53495826,3 | MCF-7 | breast: | |
5 | chr20:53486051..53487926-chr20:53489950..53491873,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000144579 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11696214 | 0.96[ASN][1000 genomes] |
rs13038124 | 0.94[ASN][1000 genomes] |
rs1398111 | 0.96[ASN][1000 genomes] |
rs1398118 | 0.94[ASN][1000 genomes] |
rs17000338 | 0.96[ASN][1000 genomes] |
rs2203127 | 0.90[ASN][1000 genomes] |
rs2870371 | 0.95[ASN][1000 genomes] |
rs2870372 | 0.93[ASN][1000 genomes] |
rs288830 | 0.83[CEU][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
rs34354535 | 0.94[ASN][1000 genomes] |
rs35146414 | 0.95[ASN][1000 genomes] |
rs36033340 | 0.96[ASN][1000 genomes] |
rs3921492 | 0.85[ASN][1000 genomes] |
rs60068035 | 0.89[ASN][1000 genomes] |
rs6023670 | 0.81[ASN][1000 genomes] |
rs6023671 | 0.81[ASN][1000 genomes] |
rs60432774 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6064124 | 0.92[ASN][1000 genomes] |
rs6064130 | 0.82[ASN][1000 genomes] |
rs6064132 | 0.94[ASN][1000 genomes] |
rs6064133 | 0.92[ASN][1000 genomes] |
rs6069023 | 0.82[ASN][1000 genomes] |
rs6069026 | 0.96[ASN][1000 genomes] |
rs6069030 | 0.95[ASN][1000 genomes] |
rs6069031 | 0.96[ASN][1000 genomes] |
rs6069032 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6069034 | 0.94[ASN][1000 genomes] |
rs6123425 | 0.82[ASN][1000 genomes] |
rs66704169 | 0.86[ASN][1000 genomes] |
rs7263291 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
rs733093 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap] |
rs8119241 | 0.90[ASN][1000 genomes] |
rs958026 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs958880 | 0.80[ASN][1000 genomes] |
rs992981 | 0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1067497 | chr20:53146241-53751820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
2 | nsv1064144 | chr20:53175264-53750137 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
3 | nsv544302 | chr20:53175264-53750137 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 66 gene(s) | inside rSNPs | diseases |
4 | nsv1060552 | chr20:53234716-53655115 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 54 gene(s) | inside rSNPs | diseases |
5 | nsv437840 | chr20:53488642-53494222 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | esv2760676 | chr20:53491517-53492110 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |