Variant report
| Variant | rs60642699 |
|---|---|
| Chromosome Location | chr8:58859543-58859544 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:58852805..58855256-chr8:58856771..58859686,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11993657 | 0.81[AMR][1000 genomes] |
| rs16922840 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16922841 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16922852 | 0.91[AMR][1000 genomes] |
| rs4567024 | 0.91[AMR][1000 genomes] |
| rs55848334 | 0.91[AMR][1000 genomes] |
| rs56376843 | 0.91[AMR][1000 genomes] |
| rs57845169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59030723 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59299876 | 0.81[AMR][1000 genomes] |
| rs60011085 | 0.82[AMR][1000 genomes] |
| rs60099745 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6471666 | 0.91[AMR][1000 genomes] |
| rs6471668 | 0.91[AMR][1000 genomes] |
| rs6471669 | 0.91[AMR][1000 genomes] |
| rs6986794 | 0.91[AMR][1000 genomes] |
| rs6987258 | 0.91[AMR][1000 genomes] |
| rs6987842 | 1.00[AMR][1000 genomes] |
| rs6994421 | 0.91[AMR][1000 genomes] |
| rs7002386 | 0.91[AMR][1000 genomes] |
| rs73248740 | 0.82[AMR][1000 genomes] |
| rs73248754 | 0.91[AMR][1000 genomes] |
| rs73250478 | 0.91[AMR][1000 genomes] |
| rs73683818 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7820265 | 0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv611411 | chr8:58835639-58878786 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv831324 | chr8:58844151-59045309 | Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:58849400-58860600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
